Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
HNSC rs59272746 chr6:15274885 G/T 1.58E-5 510 22.2 21.1 9.37 KM Plot
HNSC rs6008443 chr22:46668692 C/T 1.5E-5 513 21.78 23.13 11.7 KM Plot
HNSC rs60173808 chr1:36002894 C/T 8.71E-6 507 21.37 26.37 3.37 KM Plot
HNSC rs60410720 chr6:15269219 G/A 1.58E-5 510 22.2 21.1 9.37 KM Plot
HNSC rs61274542 chr13:24958840 C/G 3.51E-5 502 14.95 24.2 22.27 KM Plot
HNSC rs62120754 chr19:2411035 C/T 1.6E-14 506 22.15 21.37 2.55 KM Plot
HNSC rs62225737 chr21:48095686 T/C 5.81E-9 507 21.48 21.02 2.73 KM Plot
HNSC rs62225738 chr21:48095716 A/G 5.26E-9 506 21.48 21.5 2.73 KM Plot
HNSC rs62323107 chr4:140381056 A/G 5.92E-6 494 18.15 26.83 20.27 KM Plot
HNSC rs6429981 chr2:132591435 G/A 4.07E-5 498 22.87 21.03 14.97 KM Plot
HNSC rs6441373 chr3:161026717 T/G 3.86E-5 513 24.63 24.07 17.53 KM Plot
HNSC rs647837 chr11:133955325 C/T 1.39E-6 515 12.27 17.33 22.33 KM Plot
HNSC rs6493313 chr15:31143772 T/C 4.3E-5 503 11.77 20.67 22.7 KM Plot
HNSC rs6598947 chr1:26560051 C/G 1.73E-5 515 6.8 19.53 22.33 KM Plot
HNSC rs6598948 chr1:26569611 G/A 1.88E-5 512 6.8 20.58 22.28 KM Plot